While it seems to work for extracting a file, the shorten compile on the Rarewares lossless page doesn't seem to work with some of the other switches - at least, the seek-table related switches. Of the ones I tried:
Worked: -h, -i
Didn't work: -s, -k
Maybe there's some difference in the syntax it expects, or its ability to automatically name, etc. For those switches the naming is implicit / automatic.