Oooo-kay!
I have now a working .bat file (along with a small helper .exe) that does the following automatically when you extract as a compressed image file in EAC:
1) Rename your cue/flac files to the format: "<artist> - <album>.*"
2) Fix the cuesheet pointer to the correct file.
3) Compress the extracted .wav to .flac with the commandline defined in the .bat file (it's location is indicated if you would like to change it)
4) imports your cuesheet while compressing
5) Tags your .flac file with the album info from EAC
5) Create a directory of the form "<artist> - <album>"
6) Moves your .flac, .cue, and .log file (if you create one) to the new directory.
It doesn't work on albums with various artists yet, but I'm working on it. You may need the
java runtime library if you don't have it already. Since I haven't tested this on other machines yet, I don't know.
Installation instructions are included with the file, which can be found
here.
EDIT: I'm also working on allowing a variable file-naming format so that you can define the file naming scheme for your own files. Please note that this is written pretty much just on a whim for dealing with my own needs, so don't expect too much. =)