Since I'm new to the software and haven't diligently RTFM, it is entirely possible that I did something wrong. In fact, I can think of a few ways this could have inadvertently occured. I realized up front that I had to be very careful to clear all existing checkmarks before starting a new operation. I also performed a test run on all operations before committing (although I could have easily missed the subtle mixups that occured). Overall, I was pretty cautious using the software.
My question is: Has anyone else experienced this problem? If not, I'll chalk it up to my carelessness. Also, if I happen to identify a reproduceable scenario, I'll post a follow up.
Thanks
Cap