You can use the metaflac command line utility to do it.
CODE
metaflac --add-replay-gain *.flac
Would work fine in any *nix type system, but the metaflac binary itself doesn't expand wildcards (instead relying on the shell to do that), so using Windows you would have to do something like:
CODE
metaflac --add-replay-gain Track01.flac Track02.flac ... Track10.flac
Not quite the easiest way to do it, but it could be possible to automate the process with scripting.