Thanks for the sample Alex B, it's people like you who allow us to refine and improve the quality presets. I've downloaded it and as you say, it's high bitrate - for both FLAC and lossyFLAC -3/-5 (1162.0kbps vs 544.1kbps).
My ears / listening environment have not allowed me to find the problem area(s?) of the sample.
Out of interest, what was your listening environment when you identified the issue?
[edit2] Additionally, maybe instead of trying -2, could you try -3 -nts 2? This may be enough to address the as yet broadly unidentified problem..... [/edit2]
[edit3] This seems to be a sample which activates the anti-clipping mechanism regularly: I tried
lossywav -3 and got 8.7384 bits removed, 0.2577 not removed;
lossywav -3 -nts 0 and got 8.6029 bits removed, 0.2492 not removed;
lossywav -3 -nts -3 and got 8.3549 bits removed, 0.2337 not removed;
lossywav -3 -snr 24 and got 8.3618 bits removed, 0.2295 not removed;
lossywav -3 -snr 27 and got 7.8982 bits removed, 0.1974 not removed;
lossywav -3 -nts -3 -snr 27 and got 7.8069 bits removed, 0.1950 not removed.[/edit3]
[edit1]
QUOTE(GeSomeone @ Jan 10 2008, 14:37)

Sorry, I didn't pay enough attention to the fact that -cbs would also be ditched. In that case my remark makes no sense. Nevermind
Don't worry about it - it was a fairly brutal reduction in settings

![/edit1]